PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.113490.3
Common NameCsa_1G039980, LOC101204688
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 529aa    MW: 58540.7 Da    PI: 9.3195
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.113490.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH56.45.3e-18232281255
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r +h++ E+rRR++iN++f++Lrel+P +    ++K +Ka+ L +++eYI+ Lq
  Cucsa.113490.3 232 RSKHSATEQRRRSKINDRFQKLRELIPRS----DQKRDKASFLLEVIEYIQFLQ 281
                     889*************************9....9*******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.5E-22227289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.85E-18229289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.091230280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.80E-15232285No hitNo description
PfamPF000101.7E-15232281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-12236286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MRTGGFLKTH DFLRPLERTG KTCAKEEKTI NVSTVERAAP TLGTQAHNSA AERLLPGGIG  60
TYSISHISYF NQRVPKPEGS VFPVPQASNT DKSDDNSRCS SLSGNGFTLW EESAVKKGKT  120
RKENLGEKPA LKESPAKIEQ WTVTTERPMQ SSSSNHRSSF SSLSPSQPSG QQSRSFGEML  180
KSTVNVSSME EELDDDKAFV IKKESSPSTA YKGDLKINIC GKSSDQKANT PRSKHSATEQ  240
RRRSKINDRF QKLRELIPRS DQKRDKASFL LEVIEYIQFL QEKVRKYESS PPQGWYHEPA  300
KLIPCRNNCN PAQCYIDQSQ IAKSGPVFIF AGSDEKNMCH SPAFPRCSHN PVESEVSTST  360
TFREADQHPG TNNKTCYPML DPRHFTPVIS EGAKTRLHSQ VGHNADNKPC EIQPLSCEMR  420
SCTTNIVDGN NKLKEPEQRI DGGRISISGA YSQGLLKILT QALQSSGVDM SQASVAVQIE  480
LGKRTNYREI VPSPIVDDSA RPSERASVGT RVIAGENMEQ ALRKKQKT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819320.0LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011650371.10.0PREDICTED: transcription factor BIM1 isoform X2
TrEMBLA0A0A0LSX00.0A0A0A0LSX0_CUCSA; Uncharacterized protein
STRINGPOPTR_0015s03550.11e-173(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.42e-85bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]